| State code | Name of the study programme | Legal basis for deregistration |
| 6121EX059 | Environmental Engineering | Letter No. SD-10 (1.6E) of the National Agency for Education of 5 January 2021 "On the deregistration of study programmes" |
| 6211EX065 | Marine Environmental Engineering | |
| 6211CX018 | Geoinformatics | |
| 6121AX012 | Computational Data Analytics | |
| 6211DX015 | Ichthyology and Fisheries | Letter No. SD-92 (1.6E) of the National Agency for Education of 12 January 2021 "On the deregistration of study programmes" |
| 6121DX015 | Ecology and Environmental Management | |
| 6121EX065 | Ship Engineering | Letter No. SD-486 (1.6E) of the National Agency for Education of 22 February 2021 |
| 6211EX068 | Ship Design and Construction | |
| 6121GX015 | Occupational Therapy | |
| 6121NX003 | English and German for Business and Professions | |
| 6121NX066 | Lithuanian Philology and Cultural Anthropology | |
| 6211JX090 | Business Economics | |
| 6281LX005 | Management of International Tourism Events | Letter No. SD-567 (1.6E) of the National Agency for Education of 10 March 2021 "On the deregistration of the study programme" |
| 6121EX060 | Biomedical Engineering | Letter No. SD-2307 (1.6E) of the National Agency for Education of 9 July 2021 "On the deregistration of the study programme" |
| 6121NX061 | English and German / French Languages | |
| 6121EX070 | Landscape Planning and Environmental Design |
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